species:   Rhsol
pid:       PID0477
parent:    Rhi-milR-120
paralog:   
locus:     KB317706.1:539986-540055
matures:   ['UCGAGUCGAGGAUUGUAGGGCC', 'AGUUGCAGACCAUCAUGAAGGGU']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317706.1:539986-540055

0 out of bounds
11 alignments
11 proper strand
11 stranded perfect matches

       *********************************************************      
CUCGAAUUGAUCGAGUCGAGGAUUGUAGGGCCUGUAAAGGAGUUGCAGACCAUCAUGAAGGGUAUUCGAA
.((((((...((..((.((((.((((((..(((....)))..)))))).)).))))...))..)))))).
----------UCGAGUCGAGGAUUGUAGGGCC-------------------------------------- l=22 a=0 c
----------------------------------------AGUUGCAGACCAUCAUGAAGGGU------- l=23 a=0 c*
-----------CGAGUCGAGGAUUGUAGGGCCUGUAAAG------------------------------- l=28 a=3 ma
----------------------------------------AGUUGCAGACCAUCAUGAAGGGU------- l=23 a=0 ma*

-------UGAUCGAGUCGAGGAUUGUAGGGCCUGU----------------------------------- l=28 a=1 
--------GAUCGAGUCGAGGAUUGUAGGGCCUGUA---------------------------------- l=28 a=1 
---------AUCGAGUCGAGGAUUGUAGGGC--------------------------------------- l=22 a=1 
----------UCGAGUCGAGGAUUGUAGG----------------------------------------- l=19 a=1 
----------UCGAGUCGAGGAUUGUAGGGCCU------------------------------------- l=23 a=1 
----------UCGAGUCGAGGAUUGUAGGGCCUG------------------------------------ l=24 a=1 
-----------CGAGUCGAGGAUUGUAGGGCCU------------------------------------- l=22 a=1 
-----------CGAGUCGAGGAUUGUAGGGCCUGUAAAG------------------------------- l=28 a=3 (ma)
------------------AGGAUUGUAGGGCCUGUAAAGGAGUUGC------------------------ l=28 a=1 

mb-00010
ax-1001001
ku-01
ss-101011101100
fn-011
